PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA129G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HB-other
Protein Properties Length: 159aa    MW: 18904.6 Da    PI: 8.8081
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA129G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.48.9e-222984156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rrk ++++++q+eeLe++F ++++p++ +r eLAkk+gL+ +q+k+WFqN+R+k k
  AA129G00001 29 RRKYQRHNPHQIEELENFFGQCPNPDKMQRSELAKKTGLENKQIKFWFQNKRTKIK 84
                 8999**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.38E-201685IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-202184IPR009057Homeodomain-like
PROSITE profilePS5007116.7952686IPR001356Homeobox domain
SMARTSM003893.4E-192890IPR001356Homeobox domain
CDDcd000861.30E-162984No hitNo description
PfamPF000462.5E-192984IPR001356Homeobox domain
PRINTSPR000319.6E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000319.6E-66682IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSEKRAYENE SRLESDNVVA DISVERRIRR KYQRHNPHQI EELENFFGQC PNPDKMQRSE  60
LAKKTGLENK QIKFWFQNKR TKIKTLTVLI LFNQIIYDQI ENEVLKQENE NLMAINKSLI  120
GETKTALCRI CHRRVNLNVV TLGYYQDFKT EESTLNDLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA129G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17003611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.17e-28HD-ZIP family protein