PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00088
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 140aa    MW: 15688 Da    PI: 8.8668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00088genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.52.9e-071253256
         AP2 32 slgkfgtaeeAakaaiaarkklege 56
                +lg+f tae Aa+a+++a+  ++g+
  AA12G00088  1 WLGTFNTAEAAARAYDQAAILMNGH 25
                9******************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-14132IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-9133IPR016177DNA-binding domain
PROSITE profilePS5103212.431132IPR001471AP2/ERF domain
SMARTSM003807.5E-5138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
WLGTFNTAEA AARAYDQAAI LMNGHNTKTN FPIIKSNGSK SFLSDLLTAK LKRKCKDQIP  60
YLTCLRLDND SCHIGVWQKR AGSKTSPNWV KLVELGDNNK VNARVNEIGI NNKMKNLDEE  120
NEIAMQMIEE LLNWPSPAAI
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00088
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062584e-31AC006258.1 Arabidopsis thaliana BAC F18G18 from chromosome V near 60.5 cM, complete sequence.
GenBankAK1187804e-31AK118780.1 Arabidopsis thaliana At5g25390 mRNA for putative AP2 domain containing protein, complete cds, clone: RAFL21-11-L16.
GenBankBT0054614e-31BT005461.1 Arabidopsis thaliana clone U51209 putative AP2 domain containing protein (At5g25390) mRNA, complete cds.
GenBankCP0026884e-31CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151068.19e-65PREDICTED: ethylene-responsive transcription factor SHINE 3
RefseqXP_022543401.19e-65ethylene-responsive transcription factor SHINE 3-like isoform X2
RefseqXP_022544182.14e-65ethylene-responsive transcription factor SHINE 3-like
SwissprotQ3E9582e-65SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A397Z1D77e-64A0A397Z1D7_BRACM; Uncharacterized protein
TrEMBLM4D0394e-64M4D039_BRARP; Uncharacterized protein
STRINGBra009837.1-P7e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.16e-58ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]