PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00124
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 223aa    MW: 26058.3 Da    PI: 5.8579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00124genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-102791798
                E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++pk+f ++   g +++    +++  ++g+sW++ l  r+  ++ y+++k W++Fv++n L ++ +++F++++++ f l+v++f+
  AA12G00124  2 YIPKEFEKSKpeGFDEN---RVVISVLWGNSWQLWL--RRDIKGlYMIEKDWNGFVDDNLLGQNHILLFTHEDTM-F-LRVQFFK 79
                69999987777544433...599999**********..6666666*************************86633.3.5777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.843181IPR003340B3 DNA binding domain
SMARTSM010190.0016181IPR003340B3 DNA binding domain
PfamPF023629.9E-8279IPR003340B3 DNA binding domain
CDDcd100174.00E-10279No hitNo description
Gene3DG3DSA:2.40.330.101.6E-10281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-12281IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
RYIPKEFEKS KPEGFDENRV VISVLWGNSW QLWLRRDIKG LYMIEKDWNG FVDDNLLGQN  60
HILLFTHEDT MFLRVQFFKQ DGTEIITPPH ESVPGTHPES DPETDPESDP EPEAEILHPR  120
PQDSHQETTP EPASGGRARQ GSILVKEREQ YMRYLKNPKN PFFVQIILRR NRQLYVSRSV  180
IKDYNLTFGD KIEYLLPHGT VEGITKYYNG HPCFNGWAGL VYV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876196.12e-58B3 domain-containing protein At5g25475
RefseqXP_020876197.12e-58B3 domain-containing protein At5g25475
RefseqXP_020876198.12e-58B3 domain-containing protein At5g25475
RefseqXP_020876199.12e-58B3 domain-containing protein At5g25475
TrEMBLD7M3Z64e-57D7M3Z6_ARALL; Uncharacterized protein
STRINGBostr.29827s0261.1.p2e-61(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-54B3 family protein