PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00125
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 166aa    MW: 18254.6 Da    PI: 8.959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00125genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-171968355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr + + ++Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  AA12G00125 19 YRGVRKRNWGNKWVSEIREPKK---KSRIWLGTFPSPEMAARAHDVAALSIKG 68
                9*******9999*******854...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.94E-311878No hitNo description
SMARTSM003801.6E-351882IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-201877IPR016177DNA-binding domain
PROSITE profilePS5103222.8791876IPR001471AP2/ERF domain
PfamPF008474.3E-121968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-291977IPR001471AP2/ERF domain
PRINTSPR003673.5E-81930IPR001471AP2/ERF domain
PRINTSPR003673.5E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKDSKKKQRN SSNKNGVIYR GVRKRNWGNK WVSEIREPKK KSRIWLGTFP SPEMAARAHD  60
VAALSIKGAS AILNFPNLAA SLPRPNSLTP RDIQAAAVKA AYMETNTTSF SEELGEIVEL  120
PSLGPSFDGL SQLGGEFVFS DSNDFWLGDD NVGIIQSFEE GLLLPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1619771573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00125
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460132.16e-67PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391274e-66TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A087GD733e-67A0A087GD73_ARAAL; Uncharacterized protein
STRINGA0A087GD735e-68(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.16e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]