PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00190
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 212aa    MW: 24106.8 Da    PI: 6.4034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00190genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
       AA12G00190  97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.632151IPR017877Myb-like domain
SMARTSM007173.8E-4253IPR001005SANT/Myb domain
SuperFamilySSF466899.75E-11458IPR009057Homeodomain-like
CDDcd001673.28E-4647No hitNo description
PROSITE profilePS5129418.40290146IPR017930Myb domain
SuperFamilySSF466891.15E-1592146IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-1693145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-1094140IPR009057Homeodomain-like
SMARTSM007176.4E-994144IPR001005SANT/Myb domain
CDDcd001678.47E-897142No hitNo description
PfamPF002493.7E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAANQWSREE DKMFERTLVI FPEGSPYRWE KIALQLNKSI DEVKEHYDAL VHDIFEIDSG  60
RVDVPDYIDD SAAGWDSAGQ ISFGSKNGDN ERKKGTPWSE NEHKLFLIGL KRYGKGDWRS  120
ISRNVVVTRT PTQVASHAQK YFLRQNSGKK ERKRSSIHDI TTVDTNLAVV PASNMDWSGQ  180
QESPVHHQLQ PQLSVSEFGQ QLPPGLDYGF GM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653806.11e-121transcription factor DIVARICATA-like
SwissprotQ9FNN61e-53SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A397ZYQ01e-120A0A397ZYQ0_BRACM; Uncharacterized protein
STRINGscaffold_600421.11e-119(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-109MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]