PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA131G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CPP
Protein Properties Length: 71aa    MW: 7942.17 Da    PI: 9.6776
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA131G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.24.4e-152764138
          TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38
                 ++k+gCnC+kskC +k CeCf+ag+ Cs +C+Ce+CkN
  AA131G00001 27 RHKRGCNCNKSKCFNKHCECFQAGVGCSLNCRCEGCKN 64
                 589**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163421.649167IPR005172CRC domain
SMARTSM011141.6E-122768IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-112964IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MTTRKNIESR NPNAFAPKFI KTPASARHKR GCNCNKSKCF NKHCECFQAG VGCSLNCRCE  60
GCKNWFGPKD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1196562121Protein lin-54 homolog
5fd3_B3e-1196562121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA131G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145268.11e-29PREDICTED: CRC domain-containing protein TSO1
SwissprotF4JIF53e-29TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A397ZBQ03e-28A0A397ZBQ0_BRACM; Uncharacterized protein
STRINGBra033919.1-P5e-29(Brassica rapa)
STRINGBo5g094500.15e-29(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15696813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-31TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]