PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1332G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YC
Protein Properties Length: 309aa    MW: 34327.1 Da    PI: 5.2231
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1332G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.21.8e-186861898
         NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                  ++++P arikki++adedv +i+  +Pvl+sk+ elf+ +l  r++  + e   +t+    ++ +v+r ++fdfl ++v +
  AA1332G00001  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86
                  5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-25372IPR009072Histone-fold
SuperFamilySSF471131.66E-19490IPR009072Histone-fold
PfamPF008083.0E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK  60
TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHASGQSHGN ADVTMEDRSI SKRRKPTGDE  120
VNDSDEEYKK IKTQEMGNAR PGGRGRGRGR GRGRGRSTRT AERENQHREM ELETAIVGPA  180
PQDSLKMHIS PPSSPQPQDG EKKEADGIQS NEDGSNHLNQ QLQSPKTGNE TNLASRSFDL  240
NAESLDINET RLPAAAATAS DSAEASTKMK AEEEYPGWSI PEMGKMDPMQ LASLGKRLDE  300
DEEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154RGRGRGRGRG
2145155RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1332G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407330.11e-130dr1-associated corepressor
TrEMBLE4MX201e-128E4MX20_EUTHA; mRNA, clone: RTFL01-20-D23
TrEMBLV4M8R71e-128V4M8R7_EUTSA; Uncharacterized protein
STRINGXP_006407330.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-123nuclear factor Y, subunit C11