PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA134G00018
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 492aa    MW: 55590.3 Da    PI: 5.407
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA134G00018genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.97.3e-26187241155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  AA134G00018 187 KARVVWSFELHQKFVSAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 241
                  68****************************************************8 PP
2Response_reg80.55.5e-27121181107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
   AA134G00018  12 VLVVDDDPTWLKILERMLKKCSY-EVTTCGLAREALRLLRERKegYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHGAC 106
                   89*********************.***************999999**********************5543.7************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   d+l Kp+ ++el
   AA134G00018 107 DYLLKPIRMKEL 118
                   *******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-439133No hitNo description
SuperFamilySSF521725.55E-369133IPR011006CheY-like superfamily
SMARTSM004481.6E-3210122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.93211126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.92E-3213126No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27185246IPR009057Homeodomain-like
SuperFamilySSF466894.12E-16185245IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-22187241IPR006447Myb domain, plants
PfamPF002492.9E-7189240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEKGFSPVGL RVLVVDDDPT WLKILERMLK KCSYEVTTCG LAREALRLLR ERKEGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVRDIEGYE GAESIWMTRN GFDHSDVEEV CFGKKRKDFE KRFHEERELG  180
DSSSTKKARV VWSFELHQKF VSAVNQIGCD HKAGPKKILD LMNVPWLTRE NVASHLQKYR  240
LYLSRLEKGK ELKSYSCGIK PVDSPPKDAE TMSSGHQSPV KIQTPGGNTV LVQRATDIEP  300
KILTAPVSDL TSEVLMPPQA KKTRIGFASD VSSSAFDSLL HKQYSWNDVP EPVESKPVVS  360
ETSFLQQPPL QSQSCYVSST SEEVKSCYET TCVAPVNVGS SVTFQEQELG SNATNNTESI  420
LRSLNWELPG PELDLCWLQG ERFLANSGFQ NIQFQDYSSP LSLLSDFPPH LYDRLADPDD  480
YSYLVEPGLF IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17183246163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA134G00018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415322e-63AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
GenBankAJ0051942e-63AJ005194.1 Arabidopsis thaliana mRNA for receiver-like protein 3.
GenBankAK2282162e-63AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
GenBankBT0087682e-63BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391233.10.0two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A1J3E5990.0A0A1J3E599_NOCCA; Two-component response regulator ARR11 (Fragment)
STRINGXP_006391233.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]