PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00015
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 1307aa    MW: 143812 Da    PI: 6.2395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00015genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-0612861307426
                  ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                  ++C+ f+++G+Ck G++C+F H+
  AA13G00015 1286 KICK-FYESGYCKKGASCSFWHP 1307
                  6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.6E-895164IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.1E-7102159IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.609107173IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-7109155IPR001965Zinc finger, PHD-type
CDDcd155682.31E-19109154No hitNo description
PROSITE patternPS013590110170IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0017316406IPR019835SWIB domain
SuperFamilySSF475924.58E-20325402IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.104.0E-22326406IPR003121SWIB/MDM2 domain
PfamPF022018.5E-13336401IPR003121SWIB/MDM2 domain
SMARTSM007191.8E-39453564IPR004343Plus-3 domain
PROSITE profilePS5136020.796453587IPR004343Plus-3 domain
SuperFamilySSF1590423.66E-27454584IPR004343Plus-3 domain
PfamPF031263.8E-16458562IPR004343Plus-3 domain
SuperFamilySSF552778.5E-16711768IPR003169GYF domain
CDDcd000727.81E-19715772No hitNo description
PROSITE profilePS5082914.988715769IPR003169GYF domain
SMARTSM004441.2E-16716771IPR003169GYF domain
PfamPF022137.4E-12717761IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.8E-17717768IPR003169GYF domain
PROSITE profilePS5010314.11712821307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-612821306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-412861306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1307 aa     Download sequence    Send to blast
MENQHKLLQQ DDPELPASSP RQESSVRGID LMRVDQCEEI AATQAPVLSG DAPTVVGQVE  60
VPIQQEVKVV DEAAPVKRKR GRPPRAQSKT QTQPRPPQPT RKDDKEEDVC FICFDGGDLV  120
LCDRRNCPKA YHPACIKRDE AFFRTTAKWN CGWHICGACQ KASSYMCYTC TFSVCRRCIK  180
DADYVIVRGN MGLCGTCIKP IMLIENIAQG DNEAAKVDFD DKLSWEYLFK VYWLCLKEDL  240
SLTVDELTKA NNPWKDVSNT APKVEPRNEI PEYTYGRAYS SDNSSLEVAV NGAKRRNTSA  300
SPTLPNKLDA KTSSIIPKKL PGDTNWATKE LLEFVAFMKN GDTSVLPQFD VQGLLLDYIT  360
KKNLRDPHQK SQVNCDLMLV KLFGKQRVGH FEMLKLLESH FLIQENSIDA KPFNGETTHA  420
ISDHDPTGRG RRRKMRKKTD SRVQNENLDA HAAIDVHNIN LIYMKRKFLE TLLDDDINKI  480
HDKVVGTILR IKVSGSGQNL AIHRLVQVVG TCKATESYQI GGKTTDVMLE ILNLDKREVI  540
SIDQLSDQSV TEDECKRLRQ SIKCGLNKRL TVGEILKKAE ALQAMRVNEV LEAEILKLTS  600
LRDRAKLLKS PEECQRLVHE TPEVHTDSSM DLGQASSEDA GLDTRKQDNH IKAQSKGMQN  660
KSTLNNLGNS AQRSFDTAVL RSINASTTYQ ADKDGCSRVH NSSDLQETGK IDEESEIWHY  720
LDPTGKTQGP FSMVQLRRWK SSGHFPPYLR IWRAHEKQDE SVLLIDALAG RFDKATALPS  780
SSMLTQELKL SSHDPGCTDV DMNCLQKNPR AENTSATSSS SFSISALVND PKEGQVVALV  840
SGSGKVEDFN SLHHQPHVSC PAPMSVVPEL VRHEVRETPG IEQSDLVRAD GNNRTVETAE  900
SKTNGGSVSI NGSVHAPNLN QDSHFLDFPS PIPKSSPEDL EAQAAETIQS LSSCVLVKGP  960
SGVTWSTTTT TTADAATTAS SIVATGLQLP QVTQQDAAVL AAPSVKQVEL ASDHAIATQA  1020
SNNSHHATAT ETSDNTQVAH SSAWPTIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST  1080
FHCDDDDDLT KGPEKDFFHP VARMSLTPET CRIDLSHSQA SILDDLSTEK ISLDTEAKDM  1140
PFSQCGTAGP ELLLFAPPAS VSHDLTLTTT ALRLGSETTV EAGPVERFSK SVPAVASEPS  1200
PRSSYDSARG NAERSPRGGQ QKRYGSSERS SGQRERPWWN NGSHSHNSSY SSQNNRQWPY  1260
SNNHGYDNGS GSGSGSYAAH PPKGLKICKF YESGYCKKGA SCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-13100176881Histone-lysine N-methyltransferase NSD3
4gnd_C6e-13100176881Histone-lysine N-methyltransferase NSD3
4gne_A6e-13100176881Histone-lysine N-methyltransferase NSD3
4gnf_A6e-13100176881Histone-lysine N-methyltransferase NSD3
4gng_A6e-13100176881Histone-lysine N-methyltransferase NSD3
4gng_D6e-13100176881Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880063.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLD7LTN20.0D7LTN2_ARALL; Uncharacterized protein
STRINGscaffold_502165.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding