PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA13G00077
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 137aa    MW: 15009.6 Da    PI: 11.2583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA13G00077genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-094383954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  AA13G00077 43 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 83
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2943483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-143593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-103688No hitNo description
SuperFamilySSF474594.97E-153894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-134089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-64383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSAMREMIFR IAVMQPIHID PETVKPPKRK NVKISKDPQS VAARHRRERI SEKIRILQRL  60
VPGGTKMDTA SMLDEAIHYV KFLKKQVQSL EEHAVVVHGG GITPATVNGG SGGGGRGCGM  120
IRSGHQIVGN INGQILR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA13G00077
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455344.15e-62PREDICTED: transcription factor HEC1-like
SwissprotQ9SND44e-55HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A1S2YYG33e-59A0A1S2YYG3_CICAR; transcription factor HEC2
STRINGXP_004511923.14e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]