PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA14G00044
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 173aa    MW: 20378.2 Da    PI: 8.3844
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA14G00044genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer697.9e-221421759
  ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +Gg+a+DGCgEfmp+ gee++++al C+AC+CHRnFHR+e  +
   AA14G00044  1 MGGNALDGCGEFMPN-GEENSIEALICSACNCHRNFHRKEIIQ 42
                 7*************8.9999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152319.774139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-19140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-15140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.7E-22140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.02E-1691155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-2792156IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-2597153IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGGNALDGCG EFMPNGEENS IEALICSACN CHRNFHRKEI IQKQNLIHKI KPQQMIMPIG  60
VSNYNYIHNL DQSNDLIEET ALNAASKPLQ TFSYNQKKRF RTKFSQEQKE KMLRFAEKIE  120
WKLQREEDCV VQRFCEEIGV KRKVLKVWMH NNKHNHFSKN MNNINLEDDH TIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-23971551775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA14G00044
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172896.13e-78homeobox protein 31
RefseqNP_973826.13e-78homeobox protein 31
RefseqXP_006305389.13e-78zinc-finger homeodomain protein 4
RefseqXP_006305390.13e-78zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-79ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A178W7686e-77A0A178W768_ARATH; ZHD4
TrEMBLR0IMH27e-77R0IMH2_9BRAS; Uncharacterized protein
STRINGAT1G14440.11e-77(Arabidopsis thaliana)
STRINGXP_006305389.11e-77(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-81homeobox protein 31