PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA14G00063
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31441.9 Da    PI: 10.2566
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA14G00063genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3391.2e-10312831301
   GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllal 84 
                 mdddg+  rn+gyyepa  +++k nlglqlms+i +rd+k+    r+ nl +  + +++++rd         m++    +++++       +++k++++
  AA14G00063   1 MDDDGF--RNWGYYEPAtaTTFKGNLGLQLMSTI-NRDTKPflpgRDPNLMIGPTGSSYHPRDcvvsetpihMSY----NWINQ-------QKDKFFNM 85 
                 99**99..9******998899*************.7**************777778899****665555555555....56665.......99****** PP

   GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkk...krqrakkpkekkakkkkkksekskkkvkk 180
                 l+v+       p+  + l++t+s+ s+q l++  +++++++       e+++i+++++e  ++kk+k   +++++  +k+kka+k+k+      +++++
  AA14G00063  86 LPVTS------PNFGNLLPETSSAPSMQILHQ-PINNNQIQ-------ENHEITTQEQELVQSKKRKslgNGSKTGPTKAKKARKAKE------DNTNS 164
                 **665......89999***********99554.34444444.......3344455444444444444000344444444444444443......33333 PP

   GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                 +   +r+k  kks+d+v+ngv++D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLaa+G+++
  AA14G00063 165 SV--QRVKPVKKSVDVVINGVNMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLAADGFNF 261
                 33..799******************************************************************************************** PP

   GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                 +n++DLk+hWA+HGtnkfvtir
  AA14G00063 262 GNAIDLKTHWARHGTNKFVTIR 283
                 *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.0E-991283IPR010409GAGA-binding transcriptional activator
SMARTSM012263.8E-1631283IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPATATTF KGNLGLQLMS TINRDTKPFL PGRDPNLMIG PTGSSYHPRD  60
CVVSETPIHM SYNWINQQKD KFFNMLPVTS PNFGNLLPET SSAPSMQILH QPINNNQIQE  120
NHEITTQEQE LVQSKKRKSL GNGSKTGPTK AKKARKAKED NTNSSVQRVK PVKKSVDVVI  180
NGVNMDISGL PVPICTCTGA PQQCYRWGCG GWQSACCTTN ISMHPLPMST KRRGARISGR  240
KMSQGAFKKV LEKLAADGFN FGNAIDLKTH WARHGTNKFV TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA14G00063
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657401.11e-153protein BASIC PENTACYSTEINE2
RefseqXP_013657402.11e-153protein BASIC PENTACYSTEINE2
SwissprotQ9LDE21e-150BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A087HNI91e-154A0A087HNI9_ARAAL; Uncharacterized protein
STRINGA0A087HNI91e-154(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-149basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]