PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA14G00065
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ZF-HD
Protein Properties Length: 166aa    MW: 19483 Da    PI: 9.4465
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA14G00065genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.22.2e-24354259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 ++++Y+eC++NhAa+lG++a+DGC+E+ p        ++  C ACgCHR++HRr +++
   AA14G00065  3 RSCVYRECMRNHAAKLGSYAIDGCREYSPP------LSGDLCDACGCHRSYHRRVETT 54
                 5789*************************9......67889*************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-19450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-17652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.63751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-1691163IPR009057Homeodomain-like
SuperFamilySSF466891.97E-795162IPR009057Homeodomain-like
TIGRFAMsTIGR015654.9E-30104163IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MQRSCVYREC MRNHAAKLGS YAIDGCREYS PPLSGDLCDA CGCHRSYHRR VETTSSDQIT  60
HVKSPFTSLR RVKQLARLKR SEEEEEEVET EETSTEDQMT ATVKRRRKSK FTAEQREAMK  120
NYAAKLGWTL RDKRGLRDEI RVFCEGIGVS RYLFKTWVNN NKKFYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA14G00065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069176e-46AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865236e-46AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039426e-46BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050276e-46BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026846e-46CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890071.14e-86zinc-finger homeodomain protein 14
SwissprotQ9LQW33e-86ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A087HNL68e-88A0A087HNL6_ARAAL; Uncharacterized protein
STRINGA0A087HNL61e-88(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-86homeobox protein 32