PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1529G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 276aa    MW: 31651.7 Da    PI: 10.0428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1529G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153052123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C + F++   L  H++ H
  AA1529G00001 30 YTCSFCRREFRSAQALGGHMNIH 52
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-62757No hitNo description
Gene3DG3DSA:3.30.160.606.0E-42856IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-53053IPR007087Zinc finger, C2H2
SMARTSM003550.00673052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2613057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKKSSKVASW EELAFAKDDA AGSLWPPRSY TCSFCRREFR SAQALGGHMN IHRRDKARLK  60
QADDQFLFSK SHNNCDDDNL ENSCYTLVFN SNPNRLKSQH SCVIDLSPSR VSLKLKSNQD  120
PPSSNLESSK NSKKILTSSP CPRSVTFKAQ MPSEVYNIPN MEGDKRRKMD RDVTKNGHQA  180
KLNLEKTTDL SISMNLVIHQ RFPITAYFGG KEKERDEFCK TRRRHESSLK PPNSSSRLLN  240
KNKVNSRNKG LEQKSECIED EIDLELRLWT DPPKKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-132552229superman protein
2l1o_A2e-132552229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1529G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410965.11e-104zinc finger protein 10
SwissprotO809421e-97ZFP10_ARATH; Zinc finger protein 10
TrEMBLV4MIL61e-102V4MIL6_EUTSA; Uncharacterized protein
STRINGXP_006410965.11e-103(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-94zinc-finger protein 10