PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA152G00005
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 166aa    MW: 18324.3 Da    PI: 6.545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA152G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-204190255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr+++ +g+W++eIrdp     +   r++lg+f+tae Aa+a++ a+++++g
  AA152G00005 41 RYRGVRQRP-WGKWASEIRDP-----HkaVRVWLGTFDTAEAAARAYDSAALSFRG 90
                 8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-2540100No hitNo description
PROSITE profilePS5103225.1194198IPR001471AP2/ERF domain
SMARTSM003807.4E-3941104IPR001471AP2/ERF domain
PfamPF008473.7E-134190IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-224199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-334199IPR001471AP2/ERF domain
PRINTSPR003673.4E-124253IPR001471AP2/ERF domain
PRINTSPR003673.4E-126480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSTMVSALTQ VLSSSSQPNP SHSSVAIEST SKAIPGEKRK RYRGVRQRPW GKWASEIRDP  60
HKAVRVWLGT FDTAEAAARA YDSAALSFRG SKAKLNFPEV VNTLPPPRPT SADDQMDYWS  120
YSQLLQSSDQ LEQEEGENTK TLEEPAKEQT LSTPSSFDFS VPSSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2538103268ATERF1
3gcc_A8e-2538103268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA152G00005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737732.12e-38ethylene-responsive transcription factor ABR1-like
SwissprotQ70II34e-38EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLV4S1822e-36V4S182_9ROSI; Uncharacterized protein
TrEMBLV4SAQ31e-36V4SAQ3_9ROSI; Uncharacterized protein
STRINGBostr.15774s0146.1.p4e-38(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-30ethylene response factor 110