PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA15G00071
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 346aa    MW: 37783.1 Da    PI: 8.3996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA15G00071genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52161491128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+++d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++    
  AA15G00071  16 LPPGFRFHPTDEELVVHYLKRKAASVPLPV-SIIADIDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIASssss 113
                 79****************************.89***************999999***************************************998888 PP

         NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  AA15G00071 114 ssgGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 149
                 8877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6412180IPR003441NAC domain
PROSITE profilePS5100561.24116180IPR003441NAC domain
PfamPF023651.8E-2717149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESTDSSGGP PSQPNLPPGF RFHPTDEELV VHYLKRKAAS VPLPVSIIAD IDLYKFDPWE  60
LPAKASFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVIASS SSSSSGGNQK  120
VGVKKALVFY SGKPPKGVKS DWIMHEYRLA DNKPSHRCDF VNKKNSLRLD DWVLCRIYKK  180
NNSSARLHTD KDLMMIDDDI FRQIPPSISG FQQHNFSKLN FFPARFSGGY GVFSDNNDPA  240
AIYDGGGTNY SGMNLASSSA STAEQLMMAN LKRDIPAPYW PVVGDQEDQN SPEKRFNGGG  300
GGGGDGGGGG ECSNITSSMA SPLGGILGEG LMRTTTYQSS GLNWYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-741018611171NO APICAL MERISTEM PROTEIN
1ut4_B9e-741018611171NO APICAL MERISTEM PROTEIN
1ut7_A9e-741018611171NO APICAL MERISTEM PROTEIN
1ut7_B9e-741018611171NO APICAL MERISTEM PROTEIN
3swm_A1e-731018614174NAC domain-containing protein 19
3swm_B1e-731018614174NAC domain-containing protein 19
3swm_C1e-731018614174NAC domain-containing protein 19
3swm_D1e-731018614174NAC domain-containing protein 19
3swp_A1e-731018614174NAC domain-containing protein 19
3swp_B1e-731018614174NAC domain-containing protein 19
3swp_C1e-731018614174NAC domain-containing protein 19
3swp_D1e-731018614174NAC domain-containing protein 19
4dul_A9e-741018611171NAC domain-containing protein 19
4dul_B9e-741018611171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA15G00071
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188170.11e-149NAC domain containing protein 2
SwissprotQ9LD441e-150NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1J3C8L71e-153A0A1J3C8L7_NOCCA; NAC domain-containing protein 18 (Fragment)
STRINGAT3G15510.11e-148(Arabidopsis thaliana)
STRINGA0A087H9U11e-149(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-151NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]