PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA15G00093

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SBP

Protein Properties

Length: 183aa MW: 20734.2 Da PI: 9.365

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA15G00093	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.7	7e-43	65	141	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+adl+eak+yhrrhkvCevh+ka++v+v g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ AA15G00093 65 MCQVDRCTADLKEAKQYHRRHKVCEVHAKASAVIVVGVSQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKSS 141 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-33	59	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.462	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.28E-38	65	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-32	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MDGKITQGQG YLMSKASVSY LVDEEMENDM DGEDEVGREE EKRKGVMDRV RGASGSGGDR 60 ASSRMCQVDR CTADLKEAKQ YHRRHKVCEV HAKASAVIVV GVSQRFCQQC SRFHELAEFD 120 EAKRSCRRRL AGHNERRRKS SGESFEGSSR RGVTGQLIQN QDRARVEMTL PMSNSSFKRP 180 QIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-44	52	139	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA15G00093

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269\|PubMed:16914499}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590498.1	2e-96	PREDICTED: squamosa promoter-binding-like protein 4
Swissprot	Q9S758	2e-84	SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBL	A0A397YVS3	3e-98	A0A397YVS3_BRACM; Squamosa promoter-binding-like protein
STRING	Bostr.0124s0106.1.p	1e-103	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	1e-58	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]