PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA15G00099

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

TCP

Protein Properties

Length: 447aa MW: 48627.6 Da PI: 6.9535

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA15G00099	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.9	9e-35	50	166	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssgka 90 +gkkd+hsk++T++g RdRRvRlsa++a+ f+d+qd+LGfd++sk+++WL+++ak ai++l+++ + +++s ++ AA15G00099 50 TGKKDKHSKVCTAKGARDRRVRLSALTAIHFYDVQDRLGFDRPSKALDWLINKAKSAIDDLAQLppwnptdslrH----------AAANAKS-----RK 133 79**************************************************************44333332221..........2222222.....12 PP TCP 91 aksaakskksqksaasalnlakesrakararar 123 k+ +s+++++ + + + +k r++++ AA15G00099 134 PKTLVSSSPPENVKIRSPPVISGTEHKHRQQQK 166 222222222222222222223333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-31	50	166	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.059	52	110	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MANEESNHHH YIISPSPPFS MRNQTAAAAE ESGGYGEIVE VHGGHIMRST GKKDKHSKVC 60 TAKGARDRRV RLSALTAIHF YDVQDRLGFD RPSKALDWLI NKAKSAIDDL AQLPPWNPTD 120 SLRHAAANAK SRKPKTLVSS SPPENVKIRS PPVISGTEHK HRQQQKRRQI GEIPMNSNEL 180 SFLPPSLDSD SIADTIKSFF PVGGGCSSSE SPPEIIQNYN QPSDLISRHQ NLQLSLQSFQ 240 NNPPSLLLHH NHRGGAEPVL FSGENNPLEL DTSATEWEQS HHNHHQSQEF ERIQRFIAWN 300 SGGAAETGGG TAEIGGEAAE TGGGTAEIGG EAAETGGGSG GGGFVFASPP ILNYQSQVFS 360 QRGSLQSINT PLIRAWFDPY HPIIAGDLHN HNHHSYHIPP AIHHSATPGI AFGSSEFSGF 420 RIPARFQEEQ NDGITNKPSF ASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MANEESNHHH YIISPSPPFS MRNQTAAAAE ESGGYGEIVE VHGGHIMRST GKKDKHSKVC  60
TAKGARDRRV RLSALTAIHF YDVQDRLGFD RPSKALDWLI NKAKSAIDDL AQLPPWNPTD  120
SLRHAAANAK SRKPKTLVSS SPPENVKIRS PPVISGTEHK HRQQQKRRQI GEIPMNSNEL  180
SFLPPSLDSD SIADTIKSFF PVGGGCSSSE SPPEIIQNYN QPSDLISRHQ NLQLSLQSFQ  240
NNPPSLLLHH NHRGGAEPVL FSGENNPLEL DTSATEWEQS HHNHHQSQEF ERIQRFIAWN  300
SGGAAETGGG TAEIGGEAAE TGGGTAEIGG EAAETGGGSG GGGFVFASPP ILNYQSQVFS  360
QRGSLQSINT PLIRAWFDPY HPIIAGDLHN HNHHSYHIPP AIHHSATPGI AFGSSEFSGF  420
RIPARFQEEQ NDGITNKPSF ASSNSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-18	57	110	1	54	Putative transcription factor PCF6
5zkt_B	2e-18	57	110	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA15G00099

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006392814.1	1e-147	transcription factor TCP3
Refseq	XP_006392815.1	1e-147	transcription factor TCP3
Swissprot	Q9MAH8	1e-124	TCP3_ARATH; Transcription factor TCP3
TrEMBL	V4JXC2	1e-146	V4JXC2_EUTSA; Uncharacterized protein
STRING	XP_006392814.1	1e-147	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2408	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-91	TCP family protein

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]