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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AA15G00326 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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| Family | NAC | ||||||||
| Protein Properties | Length: 338aa MW: 39266.9 Da PI: 6.7461 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 177.1 | 4.9e-55 | 6 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeelvv+yL +kv+g+++el ++i++vd+yk+ePw+Lp + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s
AA15G00326 6 LPPGFRFHPTDEELVVYYLDRKVKGRSIEL-QIIPQVDLYKCEPWELPGgseksYLPGNDMEWYFYSTRDKKYPNGSRTNRATREGYWKATGKDRPVES 103
79****************************.89***************5345443344788*************************************9 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
AA15G00326 104 -KKVKMGMKKTLVYYRGRAPHGLRTSWVMHEYRL 136
.9999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 3.53E-61 | 3 | 157 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 57.694 | 6 | 157 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.6E-28 | 7 | 136 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 338 aa Download sequence Send to blast |
MAAMSLPPGF RFHPTDEELV VYYLDRKVKG RSIELQIIPQ VDLYKCEPWE LPGGSEKSYL 60 PGNDMEWYFY STRDKKYPNG SRTNRATREG YWKATGKDRP VESKKVKMGM KKTLVYYRGR 120 APHGLRTSWV MHEYRLINSP PSSSFKDSCA LCRVFKKNIQ IPKRIEEEEI SNVGKEEEGE 180 EEEEEEEGEK EEKKKKKRKW RSRSRSRCAE SEMHEREEEE RWKLRESTET SSISSELTQG 240 NNNTTLQHQP ILSSLNEANS SSSSIFSLYL SSSLIQDYHF IPDPIQLHHF PHLSLNNEAH 300 IMSFINQQHL PRTDSLSGTL DDIFSFSSST TFSASDPF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-52 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-52 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-52 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-52 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 1e-52 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 1e-52 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-52 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 192 | 198 | KKKKKRK |
| 2 | 193 | 198 | KKKKRK |
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00205 | DAP | Transfer from AT1G54330 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA15G00326 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010462486.1 | 1e-121 | PREDICTED: NAC domain-containing protein 86-like | ||||
| TrEMBL | A0A087H075 | 1e-119 | A0A087H075_ARAAL; Uncharacterized protein | ||||
| STRING | XP_010462486.1 | 1e-120 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM8123 | 26 | 40 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G54330.1 | 9e-94 | NAC domain containing protein 20 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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