PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA167G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 240aa    MW: 25861.9 Da    PI: 6.3103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA167G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-091031431055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  AA167G00002 103 QLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 143
                  57******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.72593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-899148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12103150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6103143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-12103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-10105147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKSSSIVNPL SSSSSSSHVD NDDFLHHILS STPWPSLLLD PPTSDTSVAG FHHHPSHIVD  60
SKQQISMLPS LHHHLPNDAV DSSVHSLYND FSVAGSLPLH LPQLRRERIA ERMKSLQELV  120
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS VSRLGGAAAS VSSQVSETTD GSHVSTSSSS  180
AANQTAENSS SDGLTMTEKQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT NISTATYPSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA167G00002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412645.11e-95transcription factor bHLH69
SwissprotQ8S3D51e-90BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A1J3EGL34e-94A0A1J3EGL3_NOCCA; Transcription factor bHLH69 (Fragment)
TrEMBLV4MMQ92e-94V4MMQ9_EUTSA; Uncharacterized protein
STRINGXP_006412645.14e-95(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-82LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]