PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA16G00066
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 243aa    MW: 27802.2 Da    PI: 9.1239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA16G00066genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
       AA16G00066 11 KGPWTEQEDTLLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58
                     79********************************************97 PP
2Myb_DNA-binding54.42.9e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
       AA16G00066  64 RGKMTSQEEALVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 109
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.644658IPR017930Myb domain
SuperFamilySSF466891.39E-2910105IPR009057Homeodomain-like
SMARTSM007173.8E-161060IPR001005SANT/Myb domain
PfamPF002496.3E-171158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-211265IPR009057Homeodomain-like
CDDcd001678.49E-121358No hitNo description
PROSITE profilePS5129426.75959113IPR017930Myb domain
SMARTSM007172.3E-1663111IPR001005SANT/Myb domain
PfamPF002492.5E-1564108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2366112IPR009057Homeodomain-like
CDDcd001672.04E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMKRVGEENR KGPWTEQEDT LLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP  60
GLKRGKMTSQ EEALVLELHA KWGNRWSKIA RKLPGRTDNE IKNYWRTHMR KKAQEKKKPE  120
SPTSSLSNCC SSSVSIANTS GNESFYDTGG SAGKINQEIK DGYSMDDIWK EIDHSASNII  180
TPVRDFYLEQ SFPPLDSPSW ESSLDSIWNT DAGKSKMMYS SFAIDQFPFC FKHGTSPWSS  240
DAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-28111134105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-271111358159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-271111358159MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-28111134105C-Myb DNA-Binding Domain
1msf_C7e-28111134105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA16G00066
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503226.11e-127PREDICTED: transcription factor MYB48-like isoform X2
SwissprotQ9LX821e-124MYB48_ARATH; Transcription factor MYB48
TrEMBLD7LMV91e-124D7LMV9_ARALL; Uncharacterized protein
STRINGXP_010503226.11e-126(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-123myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]