PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA178G00002

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 190aa MW: 22221.4 Da PI: 7.3774

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA178G00002	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.5e-14	32	120	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k l+ +++l+++++ +p +fa+ hg+k sk +t+e++ g +++l ++ ++++++++GW eF++a+ + eg ++F+++g+s+f +v +f+ AA178G00002 32 K-LILPSTLNRKIMKIPPRFAKLHGSK--LSKFVTFETPMGFNRSIQL--KRIGEEIWFQEGWIEFAEAHSIAEGHLLMFEFNGKSTF--HVVIFD 120 4.44567777788******999977..8999***********..*****************************9998888..999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.2E-20	26	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.7E-20	28	121	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.547	29	122	IPR003340	B3 DNA binding domain
CDD	cd10017	8.80E-13	30	120	No hit	No description
SMART	SM01019	3.4E-15	30	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-12	30	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVTTRKMKTR ATSDSHHRPP SYPFSPVTKF LKLILPSTLN RKIMKIPPRF AKLHGSKLSK 60 FVTFETPMGF NRSIQLKRIG EEIWFQEGWI EFAEAHSIAE GHLLMFEFNG KSTFHVVIFD 120 VTASEIKYPF DEDKDVEIIE IMDDSDDSDH EPKKRTSDFG FHRILIDIDA MDSHEALKED 180 KRDFRGKQRF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA178G00002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_192068.1	2e-67	AP2/B3-like transcriptional factor family protein
Swissprot	Q9ZSH7	1e-68	Y4158_ARATH; B3 domain-containing protein At4g01580
TrEMBL	A0A087FZC0	9e-69	A0A087FZC0_ARAAL; B3 domain-containing protein
STRING	A0A087FZC0	1e-69	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	1e-69	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]