PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA17G00021
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 284aa    MW: 32084.5 Da    PI: 5.9861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA17G00021genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-091652031255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 RR++i +++  L +l+P+      kK++ a+iLe+A +YIk Lq
  AA17G00021 165 RRKKISEKIRSLEKLMPWE-----KKMEMAAILEEAYKYIKFLQ 203
                 ******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.115153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0076161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-9165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-7165207No hitNo description
Gene3DG3DSA:4.10.280.107.9E-10165208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7165203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METWSEFDSV SELPPLPQEY NPMEYSDNYA YIPSVDTPLE SLVPFPPSDF SPSSDQHFLQ  60
LQHSGDSFYF DSPFSLLNRH HLADSTNLEE IFHGAFPDVA TPFLQMPDLQ SFEHTVSTAG  120
DKTKAFPCLS PPEPVPVRHG EKRRHVQSSF TVSPSCSKPI CGGERRKKIS EKIRSLEKLM  180
PWEKKMEMAA ILEEAYKYIK FLQAQISAFQ WMPLDSIYCT GSGSHGGRGT EQVDLLKTLT  240
RQQILQVMAN SPGVRCVLYT RGVCVISHEQ LLSLKMMTQS TTNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA17G00021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299889.15e-76transcription factor bHLH117
SwissprotQ9LRJ49e-66BH117_ARATH; Transcription factor bHLH117
TrEMBLR0GAQ11e-74R0GAQ1_9BRAS; Uncharacterized protein
STRINGBostr.19424s0450.1.p7e-81(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]