PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00023
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20656.6 Da    PI: 10.0258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00023genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.9e-211057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++e++  +qvtfskRr g++KKA+EL +LC+aev +i+fs+ +k y +
  AA18G00023 10 KVEDTNTKQVTFSKRRSGLFKKASELATLCNAEVGIIVFSPGNKPYSF 57
                6799999**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.366161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-26171IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRRKIKIEK VEDTNTKQVT FSKRRSGLFK KASELATLCN AEVGIIVFSP GNKPYSFGKP  60
SFNVVANRFK RDFEESDNNI GESSSRSKRS KQDSEISTRF NSIVEATDAE KKNGENLRLL  120
LEAGGDKRFM KPDEEFTIEE LKKLKAKLES KLCAIEDNVN QILGLNFLML LSKGEAKVEK  180
KDV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407920.14e-67agamous-like MADS-box protein AGL29
SwissprotO647031e-51AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLV4MA989e-66V4MA98_EUTSA; Uncharacterized protein
STRINGBostr.22252s0371.1.p1e-67(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.17e-54AGAMOUS-like 91
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]