PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00024
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19680.6 Da    PI: 8.3108
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.9e-21350249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + en+  +qvtfskRr g++KKA+EL +LC+aev +i+fs+ +k y +
  AA18G00024  3 KMENTNTKQVTFSKRRSGLFKKASELATLCNAEVGIIVFSPGNKPYSF 50
                579**************************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.581154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-23166IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-24153IPR002100Transcription factor, MADS-box
PfamPF003191.7E-24350IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-111631IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-113152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEKMENTNTK QVTFSKRRSG LFKKASELAT LCNAEVGIIV FSPGNKPYSF GKPSFDVVAD  60
RFKRENKDSD NTRKRCRRGK IVKVDEISTR LNSIIEETEA EKEKGEKLRL LFEAGGDKRF  120
IKADEEFKVN ELKKLKANLE SKLCVIEENI DQMLGLEFLM CLSKGEAFED EV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407920.17e-56agamous-like MADS-box protein AGL29
TrEMBLV4MA982e-54V4MA98_EUTSA; Uncharacterized protein
STRINGXP_006407920.13e-55(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.15e-42AGAMOUS-like 91