PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA18G00054
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 261aa    MW: 28921.3 Da    PI: 5.1004
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA18G00054genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.74.7e-372177662
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ +
  AA18G00054 21 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPK 77
                57***************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088428.632175IPR003851Zinc finger, Dof-type
PfamPF027011.9E-312275IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-252370IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MERTGAVTSS FIWRPNTEIS PSCPRCGSSN TKFCYYNNYS LTQPRYFCKG CRRYWTKGGS  60
LRNVPVGGGC RKSRRPKSSS SSSSSSSNTH KISPSSSNGG SPSIDLALVY ANFLNPNLDD  120
SKTSNDHHDH DHQMLNGTFK DHESLVPPIG VSLGSTWSMD INDHHDDQGR FFHEDGIDNF  180
RTDADDEHHQ NVEDCGYNGL PPFPGEELIS LDQSNVWSDA LLIDVNPVQS REPVVNFGEE  240
SNESTNILFG SWSPFDFSAD G
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA18G00054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001327531.11e-101Dof-type zinc finger DNA-binding family protein
SwissprotQ9SVC51e-102DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLC0SVE31e-100C0SVE3_ARATH; Dof-type zinc finger DNA-binding family protein (Fragment)
STRINGAT3G52440.11e-101(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.17e-89Dof family protein