PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA18G00139

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 280aa MW: 32259.6 Da PI: 4.8087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA18G00139	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	156	200	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq AA18G00139 156 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 200 677899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.525	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-9	153	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	153	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-8	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-5	156	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.46E-4	172	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSMGCLSYFS NWDSPIQPIQ LQDCFIPDMD MIIPETDNFF LHSQPQFHQP LFQEEAHFSN 60 HFLPPQEIFL PNPNPNPNPT EFYTETHQFD PFLPPPKRQK LSYHCNNTLL DPYDFDILPE 120 SLVFPEFKVP DFSLDFKVGR GDQDEYSRKP LLSAQSIAAR ERRRRIAEKT HELGKLIPGG 180 QKLNTAEMFQ AAAKYVKFLQ SQIGILQLVQ TTTQTPESYK VGIETQVLLS SQAIQEKLSM 240 EEVCLVPSEV VQTLTNDESI WRNPKISREI NKLLSTDLVN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA18G00139

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879517.1	1e-117	transcription factor bHLH53
Swissprot	Q84RD0	1e-116	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	1e-116	D7LH48_ARALL; Predicted protein
STRING	Al_scaffold_0004_1965	1e-117	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-113	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]