PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA18G00187

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CAMTA

Protein Properties

Length: 891aa MW: 102019 Da PI: 8.0109

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA18G00187	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	96.6	2e-30	29	158	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg...................vevl 81 +e +rwl+++ei+a+L n++++ + ++ + pksg+++L++rk++r+fr+DG++wkkkkdgkt++E+he+LKv e + AA18G00187 29 EEaYSRWLRPNEIHAVLCNHKHFPINVKPVNLPKSGTVLLFDRKMLRNFRRDGHNWKKKKDGKTIKEAHEHLKVWLvtrkgymytmptvtitlplFEGV 127 55589*********************************************************************9877888888888888888888888 PP CG-1 82 ycyYahseenptfqrrcywlLeeelekivlvhylev 117 ++y+ e++++f +++e+ivlvhy+e+ AA18G00187 128 TGYWISYENKSSFPSN-----GRSQEHIVLVHYRET 158 8888888888888774.....345689999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	48.176	24	164	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.6E-39	27	159	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.5E-24	31	102	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.64E-13	342	428	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.01E-14	528	638	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-16	528	642	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.46E-17	537	652	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.273	546	611	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	579	608	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	579	611	IPR002110	Ankyrin repeat
Pfam	PF13637	5.9E-6	581	626	No hit	No description
SuperFamily	SSF52540	2.12E-5	692	793	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	98	723	745	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.035	727	751	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	765	787	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	766	790	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.7E-4	767	787	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.1	843	865	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.59	844	873	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.23	845	865	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MDGVGGRLAG SEIHGFHTFR DLDVQTMLEE AYSRWLRPNE IHAVLCNHKH FPINVKPVNL 60 PKSGTVLLFD RKMLRNFRRD GHNWKKKKDG KTIKEAHEHL KVWLVTRKGY MYTMPTVTIT 120 LPLFEGVTGY WISYENKSSF PSNGRSQEHI VLVHYRETLE VAPATPGNSY SSSITDNLSP 180 KLVSEDIISG HHNACNTVCS NSLVVRNHEN KLHEINTLDW DDLLVPSDNS NQPAPTQEDM 240 SYFMEQLQPV VRNSANHENN LACYNTPTDI QSFPGLGETA HQNENGLQSE ESFGRWLNSF 300 ISDSPGSVED PSFESMVTHG QDPSATSVIR NSPSNIPEQV FNITDVSPAW AYSVERTKIL 360 ITGFFHDSFQ HYERSNLFCI CGESCVTAEY LQVGVYRCFL PPQSPGVVDL YLSADGHKPI 420 SQFFSFEHRS HPVLEKAVPQ DDELYKWEEF EFQVRLAHLL FTSSNKISAL STKISPVNIQ 480 EAKKLANRTS HLLNSWAYLM KSIQANEVSF DQAKDHLFEL TLKNRLKEWL LEKVLENRNT 540 KEYDSKGLGV IHLCAVLGYT WSIHLFSWAG ISLDFRDKHG WTALHWAAYY GREKMVAALL 600 SAGARPNLVT DPNKQNLGGC TAADLAQEKG YDGLSAFLAE KSLIAQFKDM KMAGNINGNI 660 EAVKTEMLSP ETVNEEEQSL KDTLAAYRTA AEAAARIQGA FREHELKVRS SAVKFGSKED 720 EVKNIIAAMK IQHAFRNYEM RRKITAAARI QFRFQTWKMR REFLNMRKKT IKIQAVFRGF 780 QVRRQYRKIT WSVGVLEKAI LRWRLKRKGF RGLQLSQTEG NQEESSDPVE DFYKTSQKQA 840 EDRLERSVVR VQAMFRSKKA QKDYRRMKMT HQEAQLEYDE LQERDEMAME T

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MDGVGGRLAG SEIHGFHTFR DLDVQTMLEE AYSRWLRPNE IHAVLCNHKH FPINVKPVNL  60
PKSGTVLLFD RKMLRNFRRD GHNWKKKKDG KTIKEAHEHL KVWLVTRKGY MYTMPTVTIT  120
LPLFEGVTGY WISYENKSSF PSNGRSQEHI VLVHYRETLE VAPATPGNSY SSSITDNLSP  180
KLVSEDIISG HHNACNTVCS NSLVVRNHEN KLHEINTLDW DDLLVPSDNS NQPAPTQEDM  240
SYFMEQLQPV VRNSANHENN LACYNTPTDI QSFPGLGETA HQNENGLQSE ESFGRWLNSF  300
ISDSPGSVED PSFESMVTHG QDPSATSVIR NSPSNIPEQV FNITDVSPAW AYSVERTKIL  360
ITGFFHDSFQ HYERSNLFCI CGESCVTAEY LQVGVYRCFL PPQSPGVVDL YLSADGHKPI  420
SQFFSFEHRS HPVLEKAVPQ DDELYKWEEF EFQVRLAHLL FTSSNKISAL STKISPVNIQ  480
EAKKLANRTS HLLNSWAYLM KSIQANEVSF DQAKDHLFEL TLKNRLKEWL LEKVLENRNT  540
KEYDSKGLGV IHLCAVLGYT WSIHLFSWAG ISLDFRDKHG WTALHWAAYY GREKMVAALL  600
SAGARPNLVT DPNKQNLGGC TAADLAQEKG YDGLSAFLAE KSLIAQFKDM KMAGNINGNI  660
EAVKTEMLSP ETVNEEEQSL KDTLAAYRTA AEAAARIQGA FREHELKVRS SAVKFGSKED  720
EVKNIIAAMK IQHAFRNYEM RRKITAAARI QFRFQTWKMR REFLNMRKKT IKIQAVFRGF  780
QVRRQYRKIT WSVGVLEKAI LRWRLKRKGF RGLQLSQTEG NQEESSDPVE DFYKTSQKQA  840
EDRLERSVVR VQAMFRSKKA QKDYRRMKMT HQEAQLEYDE LQERDEMAME T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA18G00187

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414383.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	V4P888	0.0	V4P888_EUTSA; Uncharacterized protein
STRING	XP_006414383.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]