PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00049
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 404aa    MW: 44922.9 Da    PI: 8.2203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00049genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.8e-114469126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C+f+++tG C yG++C+++H+
  AA19G00049 44 PGERDCQFYLKTGLCGYGSTCRYNHP 69
                5789*********************9 PP
2zf-CCCH36.67.8e-1289113327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f++tG CkyG++Ck++H++
  AA19G00049  89 QPDCEYFLKTGACKYGSTCKYHHPK 113
                 789********************96 PP
3zf-CCCH38.32.2e-12133158227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C++++rtG C++G  CkF+H++
  AA19G00049 133 GEKPCPYYMRTGMCRFGVACKFHHPQ 158
                 689*********************97 PP
4zf-CCCH39.21.2e-12264286426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++Crff+ tGtCkyGd Ck++H+
  AA19G00049 264 PECRFFMNTGTCKYGDDCKYNHP 286
                 79********************8 PP
5zf-CCCH277.8e-09307333127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C +f  +G+Ck+G++CkF H++
  AA19G00049 307 PGQPACGNFTSYGFCKFGPNCKFDHSM 333
                 57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0234371IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-44969IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89686114IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-686113IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-492112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46131159IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6131158IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5135157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878260288IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7261287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6264286IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10264286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5266285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6302332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554306334IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5306333IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7308332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MADTQHVQSS IRSIRSSDKI EGAFRKMKVN DDGVMQSSLY PDRPGERDCQ FYLKTGLCGY  60
GSTCRYNHPT NLQQAIVYYK DELPERIGQP DCEYFLKTGA CKYGSTCKYH HPKDRNGAEP  120
VLFNVIGLPM RQGEKPCPYY MRTGMCRFGV ACKFHHPQPL NGSSTAYGMS CFPSADLPYA  180
SGLTMMSLPP PTYGALPRPQ VPQGYVPVMV SPSQGLLPPQ GWATYMATSN PMYNVKNQLY  240
SNSNTSLPVA VPLSHSLSER SELPECRFFM NTGTCKYGDD CKYNHPGVRI SQPPPNLLNP  300
FVLPARPGQP ACGNFTSYGF CKFGPNCKFD HSMLPYPYSN MGLPIASLPT AYASIPQRIS  360
PLPNRSDSKP AQRKERSESE KPKEDSEQMS NLEEVNDTSE NLSS
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892258.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGAl_scaffold_0001_4290.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]