PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00150
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bZIP
Protein Properties Length: 278aa    MW: 30916.7 Da    PI: 10.2724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00150genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.13e-16195254261
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 ++ +r+rr++kNRe+A rsR+RK+a+++eLe+ +++Le+eN++L ke+ e +ke +k  +
  AA19G00150 195 AAAQRQRRMIKNRESAARSRERKQAYQAELETLAAKLEEENEKLCKEIAEKSKERYKKLM 254
                 5789*****************************************999887777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-14192254No hitNo description
SMARTSM003384.3E-10194258IPR004827Basic-leucine zipper domain
PfamPF001703.4E-15195255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.128196248IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10198249No hitNo description
CDDcd147071.40E-16198244No hitNo description
PROSITE patternPS000360201216IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASFKVMSSS NSRDSDLSRR NSSSASSSPS IKSHLLRRDS NTDHSRISFA NTGRNQRRIS  60
PTSISDPPPP LNDQKLEAMA AKATEKKSVD DVWREIVSGE RKKMKEETQE DIMTLEDFLA  120
KAAMDETVGT RGDSNDIDVK IPLNNGGGSG YTFDFPMQPH GYGNGLGGSG SGSGSGSGFG  180
RGKRGRVMVE PLDKAAAQRQ RRMIKNRESA ARSRERKQAY QAELETLAAK LEEENEKLCK  240
EIAEKSKERY KKLMEQVVPV VEKSKPLRFL RRSQSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171893.11e-84G-box binding factor 4
SwissprotP427771e-85GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A384LG293e-83A0A384LG29_ARATH; GBF4
TrEMBLQ2HIT63e-83Q2HIT6_ARATH; At1g03970
STRINGAT1G03970.15e-84(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-57G-box binding factor 4