PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00169
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 157aa    MW: 17823.9 Da    PI: 7.5037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00169genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.8e-3296153158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 ldDg++WrKYG+K+vk+s++pr+YY+C+  gCpvkk+ver ++dp++v++tYeg+Hnh
  AA19G00169  96 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERYNDDPSFVITTYEGSHNH 153
                 59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3382153IPR003657WRKY domain
SuperFamilySSF1182901.7E-2889153IPR003657WRKY domain
PROSITE profilePS5081129.66691153IPR003657WRKY domain
SMARTSM007746.9E-3696155IPR003657WRKY domain
PfamPF031061.6E-2597153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSMNNEGTNF AMSFSDETNS GAMFDEWLDD DLMSVISGIS QNINHQIQTS DVLMQGSSST  60
TPILTPTGRL ENQNLNQKKK VKERVAFKTR SDVDVLDDGF KWRKYGKKMV KNSPNPRNYY  120
KCSVDGCPVK KRVERYNDDP SFVITTYEGS HNHLGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-2786153774Probable WRKY transcription factor 4
2lex_A7e-2786153774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197989.26e-61WRKY DNA-binding protein 50
SwissprotQ8VWQ55e-62WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLC0SVQ61e-59C0SVQ6_ARATH; Uncharacterized protein At5g26170 (Fragment)
STRINGAT5G26170.12e-60(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-64WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]