PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00212
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22343.4 Da    PI: 9.5432
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00212genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1880132456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + ++t+ ql  Le+ F+++ +++ e++ +L+k+lg++ rq+ vWFqNrRa++k
  AA19G00212  80 KKRLTSAQLASLERSFQEEIKLDSERKVRLSKELGVQPRQIAVWFQNRRARWK 132
                 4569************************************************9 PP
2HD-ZIP_I/II108.74.1e-3579169292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl++ q+++LE+sF+ee kL++erKv+l++eLg+qprq+avWFqnrRAR+k+kq+E+ ye+L+++y  + +e+e+L++ev++L++ ++
   AA19G00212  79 KKKRLTSAQLASLERSFQEEIKLDSERKVRLSKELGVQPRQIAVWFQNRRARWKAKQVEQLYESLRQEYVVVCREKEMLSDEVNKLKAIVR 169
                  9*************************************************************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.19674134IPR001356Homeobox domain
SuperFamilySSF466891.03E-1774135IPR009057Homeodomain-like
SMARTSM003892.6E-1576138IPR001356Homeobox domain
PfamPF000464.5E-1680132IPR001356Homeobox domain
CDDcd000862.37E-1482135No hitNo description
Gene3DG3DSA:1.10.10.606.9E-1983132IPR009057Homeodomain-like
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEWSTSNNLE NMRATFMPPP WPDSTSINLL HSFNYDPYAG GDSYTAADTQ TGPVISIPES  60
EKIINAYRLA SKTKTEIIKK KRLTSAQLAS LERSFQEEIK LDSERKVRLS KELGVQPRQI  120
AVWFQNRRAR WKAKQVEQLY ESLRQEYVVV CREKEMLSDE VNKLKAIVRE QGLNNTRVNH  180
ALVSSSSSCW LSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00212
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871058.15e-97putative homeobox-leucine zipper protein ATHB-51 isoform X3
RefseqXP_013627901.14e-97PREDICTED: putative homeobox-leucine zipper protein ATHB-51
RefseqXP_024012411.15e-97putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-95ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLD7LWT71e-95D7LWT7_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60002492e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-97homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]