PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00232
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 217aa    MW: 24123.2 Da    PI: 7.7433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00232genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063138160123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+  Fs+   L  H+r+H
  AA19G00232 138 HECSICKAEFSSGQALGGHMRRH 160
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-1076101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-97699No hitNo description
SMARTSM003550.267799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1877104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-9133160No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4135162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031138160IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-13138162IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307138162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MMTNVQEESG DHARLILLKG KRTKRQRSSS PLTNANATAV LEEYCNEVSV TTDEDEDMAN  60
CLMLLSQGNT KISNSVYHCK TCDKSFLSFQ ALGGHRASHK KLKSASASAV ETLENGGFLS  120
LQVTSGELYC NKKQEKIHEC SICKAEFSSG QALGGHMRRH RGLILNSNNN NQESCKRPKN  180
FLELDLNLPA PEDEKTRFTF GAKDQILVFN SLIDCHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00232
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195971.14e-83C2H2-type zinc finger family protein
SwissprotQ681X42e-44ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A178U6H48e-82A0A178U6H4_ARATH; Uncharacterized protein
TrEMBLQ9LZD58e-82Q9LZD5_ARATH; C2H2-type zinc finger family protein
STRINGAT5G03510.11e-82(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-78C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]