PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA19G00255

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HD-ZIP

Protein Properties

Length: 65aa MW: 7627.88 Da PI: 10.6153

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA19G00255	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	16	65	3	52
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 k+ +++k+q +Lee F+++++++ +++ LA+kl+L+ rqV vWFqNrR AA19G00255 16 KKLRLSKDQDLVLEETFKEHSTLNPKQKVALANKLNLKARQVEVWFQNRR 65 566799*******************************************9 PP
2	HD-ZIP_I/II	73.1	5.4e-24	15	65	1	51
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrR 51 ekk+rlsk+q +LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrR AA19G00255 15 EKKLRLSKDQDLVLEETFKEHSTLNPKQKVALANKLNLKARQVEVWFQNRR 65 69************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.046	11	65	IPR001356	Homeobox domain
SMART	SM00389	3.3E-5	13	65	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-15	15	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-16	16	65	IPR009057	Homeodomain-like
CDD	cd00086	6.01E-11	16	65	No hit	No description
Pfam	PF00046	4.9E-15	16	65	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
KDKTRPCIIG ALDPEKKLRL SKDQDLVLEE TFKEHSTLNP KQKVALANKL NLKARQVEVW 60 FQNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA19G00255

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By transition from light to far-red light. {ECO:0000269\|PubMed:8106086}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_182018.1	2e-22	homeobox-leucine zipper protein 4
Swissprot	P92953	2e-23	ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBL	A0A1J3FYN0	4e-21	A0A1J3FYN0_NOCCA; Homeobox-leucine zipper protein ATHB-4 (Fragment)
TrEMBL	A0A1J3GY36	2e-21	A0A1J3GY36_NOCCA; Homeobox-leucine zipper protein ATHB-4 (Fragment)
TrEMBL	A0A384LKZ1	5e-21	A0A384LKZ1_ARATH; HB4
TrEMBL	C0SV86	5e-21	C0SV86_ARATH; Uncharacterized protein At2g44910 (Fragment)
STRING	AT2G44910.1	9e-22	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	9e-26	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Gallemí M, et al. A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]