PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00297
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family E2F/DP
Protein Properties Length: 295aa    MW: 33246.8 Da    PI: 7.5694
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00297genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.51.1e-2351132471
     E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  AA19G00297  51 GGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnsekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 132
                 689999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.6E-982284IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.2E-3645136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.6E-2948132IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-1851133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-1952132IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.66E-37139276No hitNo description
CDDcd144587.82E-29139240IPR014889Transcription factor DP, C-terminal
SMARTSM011383.0E-43139282IPR014889Transcription factor DP, C-terminal
PfamPF087811.7E-32140265IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEMNSFITPE RQIHSSVNLK KTPVRRRLIV DEDSEIGSVS EKKGQSRTGG GGLRQFSVMV  60
CQKLEAKKIT TYKEVADEII SDFATIKQNS EKPLNDNEYN EKNIRRRVYD ALNVFMALDI  120
IARDKKEIRW KGLPVTCKKD VEDVKIERTT AMNRVQKKTA FLKELKEKVS SLESLMSRNQ  180
QMLVKAEAPA EGFTLPFILL ETDPHAVVEI EISEDMQLVH LDFNSTPFTV HDDPYILKLM  240
HEHKLQQQNR VCSPHQLSQH SSAYSSSSSC IASGTGTGTG TSGPVCWNSG SIDTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2642136392PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00297
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398706.11e-166transcription factor-like protein DPA
RefseqXP_024011885.11e-166transcription factor-like protein DPA
RefseqXP_024011886.11e-166transcription factor-like protein DPA
RefseqXP_024011887.11e-166transcription factor-like protein DPA
SwissprotQ9FNY31e-165DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A078HSW01e-165A0A078HSW0_BRANA; BnaA10g27090D protein
STRINGXP_006398706.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-160Transcription factor DP