PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00371
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 251aa    MW: 30482.1 Da    PI: 6.6506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00371genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.23.7e-172622386
    trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                ++k++k lWe vs+km ++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
  AA19G00371  2 ETKRNKLLWEVVSAKMTDKGFLRSSEQCKSKWKNLVTRYKACETSEAEA---IRQHFPFYNEIQ 62
                56889******************************************85...55679***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-14364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METKRNKLLW EVVSAKMTDK GFLRSSEQCK SKWKNLVTRY KACETSEAEA IRQHFPFYNE  60
IQSIFTSRMQ RMLWSEPSTS KRKHNQYSSD EDDEEEEVEV EETNQENINN ELLSLVETQK  120
KETEVTTTVT NPRKRAKKEK VVTSGIRAST NSNSLKDMLE EFMKQTIKMD KEWRDAWEMK  180
ERERERRERE WRRRMEELEE ERAAAERRWM EREEERRLRE EARALKRDAL IDALLNKLNR  240
DHDHHDHHQG F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195758.11e-105Homeodomain-like superfamily protein
SwissprotQ9SDW01e-107TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A178UAE81e-104A0A178UAE8_ARATH; Uncharacterized protein
TrEMBLM4EJD31e-105M4EJD3_BRARP; Uncharacterized protein
STRINGAT5G01380.11e-105(Arabidopsis thaliana)
STRINGBra028899.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-80Trihelix family protein