PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA19G00482
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 285aa    MW: 31554.8 Da    PI: 8.6637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA19G00482genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06257279223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++ +L++Hi + H
  AA19G00482 257 VCPKCSRGFRDPVDLVNHIERdH 279
                 7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.12E-11459No hitNo description
PROSITE profilePS510397.6071056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.0E-91153IPR000058Zinc finger, AN1-type
PfamPF014283.0E-121350IPR000058Zinc finger, AN1-type
SMARTSM001549.9E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091151IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.46E-993143No hitNo description
PROSITE profilePS510398.05798151IPR000058Zinc finger, AN1-type
PfamPF014285.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.018101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.12218246IPR007087Zinc finger, C2H2
SMARTSM003550.065218241IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954256284IPR007087Zinc finger, C2H2
SMARTSM003557.9256279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280258279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLQVLCLDHR SYMKHNCPKG DKKDVTVVIC  60
PLCAKGVRLN PEEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEVL TFSNTIKCRD  120
CSIDHCLKHR FGPDHTCPGP RKPDTSFPFM GFLNNSSRKE ATAKPNRASS GSGSSSSSRW  180
SNLVSSGFSK LSNDISQKLQ FASGSNGGSN GGSNGNIEVC PQCSAKFSSV ISLVEHVERS  240
HERKKKKQIH GEVTIDVCPK CSRGFRDPVD LVNHIERDHR GTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA19G00482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.11e-161PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-156SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1J3INK21e-155A0A1J3INK2_NOCCA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
STRINGXP_010505969.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-152C2H2 family protein