PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00022
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 404aa    MW: 46794.2 Da    PI: 5.31
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00022genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.47.4e-2951343127
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                pG+rF Pt++e++ + L+ k+ g  l+++++i+e++iy+++Pw+L+ k      k+k+++  wyfF+++d     g+r+nr+t+sg+Wk tgk  ++ ++
  AA1G00022   5 PGIRFCPTEDEMIRRNLHCKLMGIMLPVNDFINEIGIYNFDPWELRcKlrlvqsKIKSRDPVWYFFVEND-----GDRQNRTTSSGFWKITGKPVQINDR 99 
                8***************************9****************8547888888888888******975.....679*********************9 PP

        NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++++g+k+ L f+ gr+p+  k +W+++ey+
  AA1G00022 100 wgdWSSAIGVKRHLRFHYGRTPNEGKGEWFIDEYH 134
                8876778***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.3783153IPR003441NAC domain
SuperFamilySSF1019411.57E-314153IPR003441NAC domain
PfamPF023651.9E-155134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDWPGIRFC PTEDEMIRRN LHCKLMGIML PVNDFINEIG IYNFDPWELR CKLRLVQSKI  60
KSRDPVWYFF VENDGDRQNR TTSSGFWKIT GKPVQINDRW GDWSSAIGVK RHLRFHYGRT  120
PNEGKGEWFI DEYHNTMLPQ NLRTHVMCRV RYSGMDKTMI FDSATELSPD FVHRLTSSVG  180
NQQLQGQGGS VNNLSEYDSV NQMDQTNWGS SNHITEYDPA NQIQNFTGNF NTQEQTSYFA  240
SNENQRLELW DYDIGNMADF SLVEMQRNSY TYHENSNEYR PKDPVTRVFD DYSSESDNDS  300
TLFGDTSSSG DSVGNPNELC SAPIPPLNSM ETAEVKMELQ GKEKVISELE CKMAKDSCLK  360
KTPATNIEKK THRTPKWIYL KNKEIWAVAV LLLFCHWLDH STIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-17513417139Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.13e-66NAC domain containing protein 1