PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00024
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 333aa    MW: 38294.1 Da    PI: 4.8891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00024genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.7e-3451373127
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                +Gfr hPt++e+v ++L+ k+ ++ l+++++i+e++iy+++Pw L+  +++k++++ wyfF++ ++ +++g  +nr+t+sg+Wk tgk k+v+++     
  AA1G00024   5 VGFRLHPTEDEMVGCHLHCKLMNRALQANNFINEIKIYSFDPWMLRfeSNLKSRDSVWYFFASVENDSTSGGGQNRSTRSGFWKITGKPKPVHDRwgfws 104
                7***************************999**************85348888999***************************************99999 PP

        NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyr 127
                 ++ ++g k++L f+ gr+ +  + +W+mhey+
  AA1G00024 105 gDRGEIGFKRVLRFHFGRTANEGNGEWIMHEYH 137
                88888************999999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.1073156IPR003441NAC domain
SuperFamilySSF1019414.32E-344156IPR003441NAC domain
PfamPF023651.2E-185137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVNLVGFRLH PTEDEMVGCH LHCKLMNRAL QANNFINEIK IYSFDPWMLR FESNLKSRDS  60
VWYFFASVEN DSTSGGGQNR STRSGFWKIT GKPKPVHDRW GFWSGDRGEI GFKRVLRFHF  120
GRTANEGNGE WIMHEYHNTM LPQHLRTHVM CRVEYKGDDI RFISDDSSEI CPDFVHYLMM  180
NSAASSSSST VVNHPVAGGS MYVKPQEQGV YLVSNGDEMQ VGLVGEESMA DEAMGSEEQV  240
PALISIEEET TQMLFESISE DYEAKWKESM VMENSSRCVE SEFYLNELCF DSPVNSPEFI  300
YEPSIERRKP EELGLLSQDK LHQLRRPSLL YTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-19613718139Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.13e-47NAC domain containing protein 1