PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00025
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 233aa    MW: 26743.1 Da    PI: 5.0118
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00025genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.15.5e-132210251127
        NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                vk++++ wyf+++ +++ ++g+ +nr tksg W  tg+  +v+++       +g+++g kk+L f +  + + +  +W++he++
  AA1G00025  22 VKSRDSFWYFYTPVENN-TSGRGQNRGTKSGSWGITGNPSPVKDRwgfwsgnQGRVIGFKKILRFRR--NINNSPVEWIIHEFH 102
                5677889******9886.57999**************************9988999*********95..5555689*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.0651121IPR003441NAC domain
SuperFamilySSF1019411.7E-174121IPR003441NAC domain
PfamPF023655.1E-105102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEDLVGFRLC PTEDEMVVQS SVKSRDSFWY FYTPVENNTS GRGQNRGTKS GSWGITGNPS  60
PVKDRWGFWS GNQGRVIGFK KILRFRRNIN NSPVEWIIHE FHNTMVPQHL RTHVLCRMEY  120
KGDDIRFLCD DASATETRPA LVQEPTLVDQ SVAVLANEIQ HVGGNLNTEE QVPVLALNRN  180
EMQAVWNYVF EDDFVSEFDE PMVSKHGNGE WRMSEESYVR IIAAAMEIKL VIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.14e-33NAC domain containing protein 1