PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00029
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 390aa    MW: 45458.5 Da    PI: 5.5494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00029genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.4e-3251313128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                +Gf F+Ptd el+ +yL+ k++g+++ ++e+i++++iy+++Pw+L+ + kvk  +  wyfFs++d+       ++r+t+sg+Wk tg+  ev ++     
  AA1G00029   5 VGFGFRPTDVELLGYYLRIKLTGSTHFVDETINDINIYSFDPWELRfQsKVKPMDPVWYFFSSTDR-------QSRKTSSGFWKITGQPMEVEDQwgnwc 97 
                7************************999999**************84236666777******9876.......67999****************999999 PP

        NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++ ++g k++Lvf+kg+     k++Wvmhey+l
  AA1G00029  98 rNRGKIGYKRVLVFHKGKIAIRGKAEWVMHEYHL 131
                88889************999999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.2593188IPR003441NAC domain
SuperFamilySSF1019415.49E-334141IPR003441NAC domain
PfamPF023654.4E-215131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGERVGFGFR PTDVELLGYY LRIKLTGSTH FVDETINDIN IYSFDPWELR FQSKVKPMDP  60
VWYFFSSTDR QSRKTSSGFW KITGQPMEVE DQWGNWCRNR GKIGYKRVLV FHKGKIAIRG  120
KAEWVMHEYH LTILPETQVL LLDYNDDTHM VDFFMRIEFK KLCFDRFLMV LVSEISQRTH  180
VICRVEYKGD NISFLYDNAT ELSPAFVQQL TVNSGLMFNT PEQLSYFASN GNGLLTLPEQ  240
DIEEALDILY DREERNVIMQ ENYNDNRPKS PVTKVFDDDS MSDSENESTL FGDTSSSEDS  300
VGNTNELCFT LIPPPLSSID QATIEREQFG QDYANYKAEE VKKEMQGKEK MKSKWYGKWL  360
KTLVARKVMY PSRIWRRGVR GIQTRSISGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-16613118140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.18e-54NAC domain containing protein 1