PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00032
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 193aa    MW: 22441.2 Da    PI: 8.2239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00032genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.51.9e-3041275127
        NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                + F+P +eel+++yL++k++++   e+ + i+e++i+++eP dLp  ++++++++ wyf s+ ++   +++r++r+ ++g Wk tg+d+++++ +++ +g
  AA1G00032   4 YTFNPPEEELISYYLNNKISENVdSEAMKLITEINICHYEPMDLPgfASIESRHDTWYFISPVETFG-KNNRRKRTSRTGHWKITGRDRTIKDFNRKPIG 102
                78*****************99984555667***************6447778888999999988875.568899999*********************** PP

        NAM 102 lkktLvfykgrapkgektdWvmheyr 127
                lkk Lvf + +++++++ +W++he++
  AA1G00032 103 LKKFLVFKE-SKNSTSSFTWIIHEFH 127
                *******85.566668999******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.9361146IPR003441NAC domain
PfamPF023652.5E-173127IPR003441NAC domain
SuperFamilySSF1019412.62E-324145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MQSYTFNPPE EELISYYLNN KISENVDSEA MKLITEINIC HYEPMDLPGF ASIESRHDTW  60
YFISPVETFG KNNRRKRTSR TGHWKITGRD RTIKDFNRKP IGLKKFLVFK ESKNSTSSFT  120
WIIHEFHSFL EHPNKDAFVL CKLMRRTSAR TLAATLTATA TANAINTPLN DTSDTTLDDS  180
YENILDKQNH AYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-15314920168NO APICAL MERISTEM PROTEIN
1ut4_B3e-15314920168NO APICAL MERISTEM PROTEIN
1ut7_A3e-15314920168NO APICAL MERISTEM PROTEIN
1ut7_B3e-15314920168NO APICAL MERISTEM PROTEIN
3swm_A2e-15314923171NAC domain-containing protein 19
3swm_B2e-15314923171NAC domain-containing protein 19
3swm_C2e-15314923171NAC domain-containing protein 19
3swm_D2e-15314923171NAC domain-containing protein 19
3swp_A2e-15314923171NAC domain-containing protein 19
3swp_B2e-15314923171NAC domain-containing protein 19
3swp_C2e-15314923171NAC domain-containing protein 19
3swp_D2e-15314923171NAC domain-containing protein 19
4dul_A3e-15314920168NAC domain-containing protein 19
4dul_B3e-15314920168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.14e-73PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A078FQS72e-70A0A078FQS7_BRANA; BnaC05g00960D protein
TrEMBLA0A3P6DBT83e-71A0A3P6DBT8_BRACM; Uncharacterized protein
TrEMBLA0A3P6F2482e-70A0A3P6F248_BRAOL; Uncharacterized protein
STRINGBo5g002870.17e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.15e-59NAC domain containing protein 49