PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00033
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 345aa    MW: 40246.3 Da    PI: 4.8893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00033genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1034e-3251303128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                +Gf+F+Pt+ el+ ++L+ k++g++  ++e+i+++diy+++Pw+L+  +kvk+ +  wyfF+++++       ++r+t+sg+Wk tg  +e+ ++     
  AA1G00033   5 VGFEFRPTEAELMGYFLRFKLTGTTSFVDETINDIDIYSFDPWELRfqSKVKSMDPVWYFFCSSNQ-------QTRKTSSGFWKITGPVTEIEDQwgiwc 97 
                7************************999899**************85347778888******9865.......57899****************999999 PP

        NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + ++g kk+L f+kgr  +  k+dWvmhey+l
  AA1G00033  98 AKGVIGFKKILRFHKGRIARRGKADWVMHEYHL 130
                8889*************99999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.2673148IPR003441NAC domain
PfamPF023654.9E-205130IPR003441NAC domain
SuperFamilySSF1019411.83E-355148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDGRVGFEFR PTEAELMGYF LRFKLTGTTS FVDETINDID IYSFDPWELR FQSKVKSMDP  60
VWYFFCSSNQ QTRKTSSGFW KITGPVTEIE DQWGIWCAKG VIGFKKILRF HKGRIARRGK  120
ADWVMHEYHL TILPENQRTH VLCRVEYKGD DISFLYDNTT EFSPVLYHQV TNSAASVFTT  180
EGEVSQFPSY DNDLLMLPET DIEEALDFVY DNREPNPYTY TREDCNEHRP KDPVTRIFDD  240
YCSDSDNEST LFGDTSSSVD SVCNPNEVCF TPIDRPTIGR EQSGQEYTNY RTQELKIELQ  300
GKEKMKSRWG WKTTVIKQII EKKIYLKITA VLSLFSIIGW ITLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-15614520162NO APICAL MERISTEM PROTEIN
1ut4_B4e-15614520162NO APICAL MERISTEM PROTEIN
1ut7_A4e-15614520162NO APICAL MERISTEM PROTEIN
1ut7_B4e-15614520162NO APICAL MERISTEM PROTEIN
3swm_A4e-15614523165NAC domain-containing protein 19
3swm_B4e-15614523165NAC domain-containing protein 19
3swm_C4e-15614523165NAC domain-containing protein 19
3swm_D4e-15614523165NAC domain-containing protein 19
3swp_A4e-15614523165NAC domain-containing protein 19
3swp_B4e-15614523165NAC domain-containing protein 19
3swp_C4e-15614523165NAC domain-containing protein 19
3swp_D4e-15614523165NAC domain-containing protein 19
3ulx_A4e-15613018140Stress-induced transcription factor NAC1
4dul_A4e-15614520162NAC domain-containing protein 19
4dul_B4e-15614520162NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559044.11e-68NAC domain-containing protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.14e-58NAC domain containing protein 1