PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00054
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 572aa    MW: 63952.2 Da    PI: 6.6887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00054genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13412457454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  AA1G00054 412 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 457
                799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5248236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19411480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-13411462No hitNo description
PfamPF000101.9E-10412457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18412471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-16414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNIGGQIWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TVGSDEDLQD KLSDLVERPN  60
SSNFSWNYAI FWQISRSKSG DLVLCWGDGS CREPKEGEES EMVKLLSLGR EEETHQKMRK  120
RVLQKLHGLF GGLEEDNCAL GLDRVTDTEM FLLASMYFSF PKGEGGPGKV FLSGKSLWLS  180
DVVNSSSDYC VRSFLAKSAG IKTIVLVPTD IGVVELGSTR SLPENQDSMK SIKSLFSSPR  240
ASLPLVLSEK RDEIGFGVSG FECPPKIFGK DLHQQQQQQQ QHRQFREKLT VRKMEDRVPK  300
RLESAAAAYP NGNRLMFSTS NNNSLINPTW VQPEIYSGRG ITAKEASDEF KFLPLQSQRP  360
PAQMQIDFSG ATSRASENSD GEGAEWVDIT DDGTRPRKRG RRPANGRAEA LNHVEAERQR  420
REKLNQRFYA LRSVVPNISK MDKASLLGDA VSYINELHAK VKVMEAERER LGYSLNPGMM  480
SLEPEINVES ISEDDVVRVR VSCSMESHPA SRMFHVFEEG KVEVIKSNLE VAEERVLHTF  540
VIKSGELTKE KLISAFSREH SSSVQSRTSS GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26406468264Transcription factor MYC2
5gnj_B1e-26406468264Transcription factor MYC2
5gnj_E1e-26406468264Transcription factor MYC2
5gnj_F1e-26406468264Transcription factor MYC2
5gnj_G1e-26406468264Transcription factor MYC2
5gnj_I1e-26406468264Transcription factor MYC2
5gnj_M1e-26406468264Transcription factor MYC2
5gnj_N1e-26406468264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00054
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077440.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_001184883.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_171634.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A178WJW50.0A0A178WJW5_ARATH; JAM2
STRINGAT1G01260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]