PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1G00065
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15503 Da    PI: 10.8572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1G00065genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-221562249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               +  n +n qvtfskRr+g++KKA+EL+vLC+a++a+i+fs+  k++ +
  AA1G00065 15 KMTNGTNLQVTFSKRRAGLFKKASELCVLCAAQIAIIVFSPGRKIFSF 62
               56799************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.866666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28785IPR002100Transcription factor, MADS-box
CDDcd002658.40E-35778No hitNo description
PRINTSPR004043.5E-20828IPR002100Transcription factor, MADS-box
PfamPF003192.6E-221662IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MARKSTGRKK IEMKKMTNGT NLQVTFSKRR AGLFKKASEL CVLCAAQIAI IVFSPGRKIF  60
SFGHPNVDSI LNRFLHPTNN DNNNNTQFLE NQMNLDARSF ASFLTQCVSM RDFDIFIRRF  120
FWLIHVGLNP TDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16790286MEF2 CHIMERA
6byy_B1e-16790286MEF2 CHIMERA
6byy_C1e-16790286MEF2 CHIMERA
6byy_D1e-16790286MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1G00065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634594.16e-42agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-39AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A072UWU11e-39A0A072UWU1_MEDTR; MADS-box transcription factor family protein
STRINGBostr.26833s0197.1.p2e-39(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]