PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA203G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 404aa    MW: 46731.1 Da    PI: 8.9987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA203G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.4e-15221011097
                  HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   +  + l++p  f+++h  g+ k++  t +l++    ++W+v+l  ++++    lt+GW++F+ a++L+ gDfvvFk++g+  f  +v++f
  AA203G00002  22 GFH-AHLRIPVAFFSAHikGLYKRN--TAKLRSnAFDKTWNVTL--EGRR----LTDGWEDFAVAHDLRIGDFVVFKYQGDLVF--FVTAF 101
                  444.459**********98766554..7888885677*******..8888....************************997555..66665 PP
2B365.48.6e-21181264590
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   ++ ++l+ + l lpkk +++ g+k +e++ ++l++ +gr+We +l+yr +s+++++t+GW++F+++ngLk+g +++ kl++ +e+
  AA203G00002 181 HITDSNLQVDTLFLPKKLITSGGLK-REDRRIILKNNQGRTWEANLRYRESSKSFYITSGWRSFCQENGLKSGNSITWKLEN-KET 264
                  56778888899********777766.6889*************************************************865.333 PP
3B350.83.1e-16311403799
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                  +  ++ks+ + +p +f ++++++k++ ++++l d++g +W+  l  +k  +r++l+kGW+eF++ n+++  ++vv ++ ++ ++  + +k+++k
  AA203G00002 311 TLCNHKSCKVHFPMRFSRANEMEKAG-RKIILVDKDGVKWDASLLTEKVYKRVFLGKGWREFCEVNQVEIDESVVMEFFWEdKTVAPIFKFCSK 403
                  5667899*************988765.6****************9999999**************************99988999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-219106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2110110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.81512104IPR003340B3 DNA binding domain
CDDcd100179.54E-1613101No hitNo description
SMARTSM010191.7E-2215104IPR003340B3 DNA binding domain
PfamPF023622.9E-102498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-20169264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-18172267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.665177273IPR003340B3 DNA binding domain
SMARTSM010191.9E-15177273IPR003340B3 DNA binding domain
CDDcd100178.25E-14177264No hitNo description
PfamPF023622.9E-18181265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11305403IPR003340B3 DNA binding domain
SMARTSM010195.3E-15309404IPR003340B3 DNA binding domain
PfamPF023622.7E-15310403IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-13312401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-14315398IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-13316391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAKSPILYPP TNPHFFKPLL PGFHAHLRIP VAFFSAHIKG LYKRNTAKLR SNAFDKTWNV  60
TLEGRRLTDG WEDFAVAHDL RIGDFVVFKY QGDLVFFVTA FGPSCCEIQY LHSSKFFPWN  120
SSIDQNVKIE SLSDDEKDST ESESVDGTDN IGTLSGEEKQ ENKINPEAES SSSDNSCFVS  180
HITDSNLQVD TLFLPKKLIT SGGLKREDRR IILKNNQGRT WEANLRYRES SKSFYITSGW  240
RSFCQENGLK SGNSITWKLE NKETPLLTYL TTEFNNAHQQ KIISRKRRRE MRKNSLAFLY  300
KGEEKDNRFV TLCNHKSCKV HFPMRFSRAN EMEKAGRKII LVDKDGVKWD ASLLTEKVYK  360
RVFLGKGWRE FCEVNQVEID ESVVMEFFWE DKTVAPIFKF CSKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA203G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.15e-80B3 family protein