PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA204G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 199aa    MW: 23451.7 Da    PI: 9.0166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA204G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.93.4e-3551353128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  +Gf F+Ptd+el+ +yLkkk  g +  +e++i+e+++++++Pw+L+   k+k +   wyfF  +    ++g+r+nr+t+sg+Wk tg+  +++++   
  AA204G00012   5 VGFGFRPTDDELIGYYLKKKNLGMTWLVEQIITEINVCSFDPWELRFesKLKPRYPIWYFFGAK---CENGDRQNRKTSSGFWKITGTPVDIKDRwgr 99 
                  7************************999899**************9522554455599***876...5689***********************9999 PP

          NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ ++g kk Lvf+k r p+  k +Wvmhey+l
  AA204G00012 100 wsgDRGKIGYKKCLVFHKDRIPTMGKIEWVMHEYHL 135
                  9987888****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.6093153IPR003441NAC domain
SuperFamilySSF1019419.15E-384153IPR003441NAC domain
PfamPF023651.1E-225135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVETVGFGFR PTDDELIGYY LKKKNLGMTW LVEQIITEIN VCSFDPWELR FESKLKPRYP  60
IWYFFGAKCE NGDRQNRKTS SGFWKITGTP VDIKDRWGRW SGDRGKIGYK KCLVFHKDRI  120
PTMGKIEWVM HEYHLTILPE NQRTHVIYRV EYKGDDISFV SDHPLKPNIA FLHDISSGVY  180
NGDGRAKKES HEEEKGRRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-21613518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA204G00012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586612.15e-72PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV967e-57NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A0D3C7161e-70A0A0D3C716_BRAOL; Uncharacterized protein
STRINGBo5g002850.12e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.13e-59NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]