PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA207G00010
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 496aa    MW: 56944.4 Da    PI: 5.8773
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA207G00010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like58.21.8e-18190245155
      G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r +Wt+eL ++Fv++ve L    e+  Pk+ilelm+v+ Lt+ +v S LQkYR 
  AA207G00010 190 KARFHWTTELNKKFVDVVETLEAMgERVAPKKILELMNVENLTRGNVSSYLQKYRE 245
                  689******************76437889**************************5 PP
2Response_reg532e-185614225109
                   EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE.STTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt.ahgeeedalealkaGakdflsKpfdpeelvk 109
                   ev+++d+++ alel+k+k+  +Dli++  emp+mdG+ell+ i  e  ++p+i+++ ++ ++e++++a+k+Ga  +lsKp   e l +
   AA207G00010  56 EVTVVDKSKMALELVKDKKvkFDLIIIEKEMPDMDGFELLQLIILET-DTPVILIScSSINPELMEKAIKYGAYFVLSKPLTVEMLNN 142
                   799************999999**********************6666.7*******9999*********************9999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-2016157No hitNo description
SMARTSM004485.3E-1117144IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.41E-1917157IPR011006CheY-like superfamily
PROSITE profilePS5011026.7918148IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.02E-1520140No hitNo description
PfamPF000727.7E-1456141IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.609.9E-21187248IPR009057Homeodomain-like
SuperFamilySSF466895.91E-14188249IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-16190246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSVTEDFELP NQFPISMRVL AVDRDEESRF FLRNLLSFCQ FQVPNLCIYP NFVDVEVTVV  60
DKSKMALELV KDKKVKFDLI IIEKEMPDMD GFELLQLIIL ETDTPVILIS CSSINPELME  120
KAIKYGAYFV LSKPLTVEML NNTCIYVLTK HKVESEKGEI AENVNELEAK DVSIISNSKR  180
KIEDSTNQKK ARFHWTTELN KKFVDVVETL EAMGERVAPK KILELMNVEN LTRGNVSSYL  240
QKYRESKKKE EAARNNDSSL AIQTKTIQTK TRQMPTTHFS KMSYNNNSTP QPNPLHHQSG  300
QVISNITPIP ASGTFLQTPN EMKKNQQVRV DHGFDQMFFN NNNSRLHMAA PNNGFLARNK  360
QQVPSYASDN GNMFQQLRSS RDNFDHFDYN NKNSLLMPAP RNIFLGGNQE QSRFSNQISG  420
FNVPNNHFEV PLETNLDVNH RGLYRDMEFG EMNKRRDDLV SSNERYLMDE ENELPSGSLD  480
IGDGFLTDLV NSYTNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA207G00010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.16e-48response regulator 10