PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2093G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 317aa    MW: 34261.1 Da    PI: 8.221
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2093G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.45.8e-36511991128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............ 77 
                   lp+G++F+Ptd+el+ e+L++kv  k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+            
  AA2093G00001  51 LPAGVKFDPTDQELI-EHLEAKVLIKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVSRDGLSRHFFHRPSKAYTTGTRKRRKiqteidnnnlqg 145
                   799************.99******9995543233444334666646**********.555666799******************889********** PP

           NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     t + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  AA2093G00001 146 nsTGETRWHKTGKTRPVMV-NGQQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 199
                   999999*************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-3847218IPR003441NAC domain
PROSITE profilePS5100532.93851218IPR003441NAC domain
PfamPF023658.3E-1652199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNKSNQTGLV TGSITGLDII DSKIEEHQLC GSKKCPSCGH KLDGKPDWVG LPAGVKFDPT  60
DQELIEHLEA KVLIKDIKSH PLIDEFIPTI EGEDGICYTH PEKLPGVSRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTEIDN NNLQGNSTGE TRWHKTGKTR PVMVNGQQKG CKKILVLYTN  180
FGKNRKPEKT NWVMHQYHLG THEEEKEGEL VVSKIFYQTQ PRQCNWSSSS NLSVLSGGNG  240
GGGEGSSGGG GGEQYCGTNT SGGGSCSSSR EIVNVNPTTV RSMNRNDDVA SGGIMAVAAA  300
AAAVAAGLPS YTMDQLX
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2093G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546021e-51AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
GenBankAL1615741e-51AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026871e-51CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137841.11e-172PREDICTED: uncharacterized protein LOC103861883 isoform X2
SwissprotQ9M0F81e-156NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078GYJ31e-175A0A078GYJ3_BRANA; BnaA03g49460D protein
STRINGBra024152.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-154NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]