PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA20G00007
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 159aa    MW: 18869.9 Da    PI: 9.0794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA20G00007genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-3278136159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrCt ++C+vkk+ver aedp++v++tYeg+H h+
  AA20G00007  78 LDDGYRWRKYGQKVVKNTQHPRSYYRCTEEKCRVKKRVERLAEDPRMVITTYEGRHFHS 136
                 59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3463136IPR003657WRKY domain
SuperFamilySSF1182901.19E-2871137IPR003657WRKY domain
PROSITE profilePS5081129.60873138IPR003657WRKY domain
SMARTSM007748.2E-3778137IPR003657WRKY domain
PfamPF031061.6E-2579135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MYAGYANKRN INESRDDDDD HDDGDDGKND DDNKQETSHR NTTSLGVVSA MKMKKLKTRR  60
KVREPRFCFK TLSEIDVLDD GYRWRKYGQK VVKNTQHPRS YYRCTEEKCR VKKRVERLAE  120
DPRMVITTYE GRHFHSPSNH LDQHDSLSSH LTPLSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2869135874Probable WRKY transcription factor 4
2lex_A2e-2869135874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA20G00007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195651.16e-71WRKY DNA-binding protein 13
SwissprotQ9SVB75e-72WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1J3DJU87e-71A0A1J3DJU8_NOCCA; Putative WRKY transcription factor 13
TrEMBLA0A1J3HQM85e-70A0A1J3HQM8_NOCCA; Putative WRKY transcription factor 13
STRINGAT4G39410.12e-70(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.17e-75WRKY DNA-binding protein 13